PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 344aa    MW: 35008.1 Da    PI: 10.5431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.3e-071441801455
                      HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OPUNC06G05210.1 144 RRIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 180
                      58999***********8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-11132190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.10E-9132184No hitNo description
SMARTSM003535.7E-9140185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4144180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11145188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQPSSRDTVA GGGGDGPQDD FFDQMLSTLP SAWADLGGWW RRRRRRGRQA ASCTGRPASA  60
ARRTGAQKGA FSPLPLFTDR TNVPPREEME GGFKSPNAAA GGEHALFNGF GVHGSGGAGT  120
APPRQQRVRA RRGQATDPHS IAERRIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ  180
LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGGGGK ASKGGTGGES GGGGGGGGGG  240
GGMRVTEQQV AKMMEEDMGT AMQYLQGKGL CLMPISLASA ISSATSSASL ISRPSIRHAG  300
VPPQTMLDAA GPTSPAAMSN GATTGAVGDD PRHAKADGGA GGTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047RRRRRRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059191e-141AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149621e-141AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-141CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.11e-141PREDICTED: transcription factor bHLH66-like
SwissprotQ9LSQ31e-67BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A0E0L8N70.0A0A0E0L8N7_ORYPU; Uncharacterized protein
STRINGBGIOSGA021777-PA1e-141(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-45LJRHL1-like 3